Plot differential contacts

plotDifferential(umi4c, grouping = NULL, colors = NULL, xlim = NULL)

Arguments

umi4c	UMI4C object as generated by `makeUMI4C`.
grouping	Grouping used for the different samples. If none available or want to add new groupings, run `addGrouping`.
colors	Named vector of colors to use for plotting for each group.
xlim	Limits for the plot x axis (genomic coordinates).

Value

Produces a plot of the fold changes at the differential regions analyzed ghat are contained in the UMI4C object.

Examples

data("ex_ciita_umi4c")
ex_ciita_umi4c <- addGrouping(ex_ciita_umi4c, grouping="condition")

enh <- GRanges(c("chr16:10925006-10928900", "chr16:11102721-11103700"))
umi_dif <- fisherUMI4C(ex_ciita_umi4c, query_regions = enh, 
                       filter_low = 20, resize = 5e3)
plotDifferential(umi_dif)
#> Warning: Removed 1 rows containing missing values (geom_point).