Plot domainogram — plotDomainogram • UMI4Cats

Plot domainogram

plotDomainogram(
  umi4c,
  dgram_function = "quotient",
  grouping = NULL,
  colors = NULL,
  xlim = NULL
)

Arguments

umi4c	UMI4C object as generated by `makeUMI4C`.
dgram_function	Function used for calculating the fold-change in the domainogram plot, either "difference" or "quotient". Default: "quotient".
grouping	Grouping used for the different samples. If none available or want to add new groupings, run `addGrouping`.
colors	Named vector of colors to use for plotting for each group.
xlim	Limits for the plot x axis (genomic coordinates).

Produces the domainogram plot, summarizing the merged number of UMIs at the different scales analyzed (y axis).

data("ex_ciita_umi4c")
ex_ciita_umi4c <- addGrouping(ex_ciita_umi4c, grouping="condition")

plotDomainogram(ex_ciita_umi4c, grouping = "condition")