Plot genes

Source: R/plotUMI4C.R

Plot genes in a window of interest.

plotGenes(
  window,
  TxDb = TxDb.Hsapiens.UCSC.hg19.knownGene::TxDb.Hsapiens.UCSC.hg19.knownGene,
  longest = TRUE,
  xlim = NULL,
  font_size = 14
)

Arguments

window

GRanges object with coordinates to use for selecting the genes to plot.
TxDb

TxDb object to use for drawing the genomic annotation.
longest

Logical indicating whether to plot only the longest transcripts for each gene in the gene annotation plot.
xlim

Limits for the plot x axis (genomic coordinates).
font_size

Base font size to use for the UMI4C plot. Default: 14.

Value

Produces a plot with the genes found in the provided window.

Examples

window <- GRanges("chr16:11348649-11349648")
plotGenes(
    window = window,
    TxDb = TxDb.Hsapiens.UCSC.hg19.knownGene::TxDb.Hsapiens.UCSC.hg19.knownGene
)

#> Joining, by = "tx_id"