Plot adaptative smoothen trend

plotTrend(umi4c, grouping = NULL, colors = NULL, xlim = NULL, ylim = NULL)

Arguments

umi4c	UMI4C object as generated by `makeUMI4C`.
grouping	Grouping used for the different samples. If none available or want to add new groupings, run `addGrouping`.
colors	Named vector of colors to use for plotting for each group.
xlim	Limits for the plot x axis (genomic coordinates).
ylim	Limits of the trend y axis.

Value

Produces the adaptative trend plot, showing average UMIs at each position taking into account the minimum number of molecules used to merge restriction fragments.

Examples

data("ex_ciita_umi4c")

plotTrend(ex_ciita_umi4c)