Variance stabilizing transformation

Source: R/callInteractions.R

Using a DDS object performs a variance stabilizing transformation from DESeq2 package to the UMI4C counts

vstUMI4C(dds)

Arguments

dds

DDS object generated by UMI4C2dds

Value

DDS object with variance stabilizing transformation counts

Details

This function estimate the size factors and dispersions of the counts base on DESeq for infering the VST distribution and transform raw UMI4C counts.